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Solid-phase synthesis

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Title: Solid-phase synthesis  
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Subject: Molecular Biology Core Facilities, Carbodiimide, Phoneutria nigriventer toxin-3, Combinatorial chemistry, Oligonucleotide synthesis
Collection: Chemical Synthesis, Solid-Phase Synthesis
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Solid-phase synthesis

In chemistry, solid-phase synthesis is a method in which molecules are bound on a bead and synthesized step-by-step in a reactant solution; compared with normal synthesis in a liquid state, it is easier to remove excess reactant or byproduct from the product. In this method, building blocks are protected at all reactive functional groups. The two functional groups that are able to participate in the desired reaction between building blocks in the solution and on the bead can be controlled by the order of deprotection. This method is used for the synthesis of peptides, deoxyribonucleic acid (DNA), and other molecules that need to be synthesized in a certain alignment. More recently, this method has also been used in combinatorial chemistry and other synthetic applications. The process was originally developed in the 1950s and 1960s by Robert Bruce Merrifield in order to synthesize peptide chains, and which was the basis for his 1984 Nobel Prize in Chemistry.

In the basic method of solid-phase synthesis, building blocks that have two function groups are used. One of the functional groups of the building block is usually protected by a protective group. The starting material is a bead which binds to the building block. At first, this bead is added into the solution of the protected building block and stirred. After the reaction between the bead and the protected building block is completed, the solution is removed and the bead is washed. Then the protecting group is removed and the above steps are repeated. After all steps are finished, the synthesized compound is cut off from the bead.

If a compound containing more than two kinds of building blocks is synthesized, a step is added before the deprotection of the building block bound to the bead; a functional group which is on the bead and did not react with an added building block has to be protected by another protecting group which is not removed at the deprotective condition of the building block. Byproducts which lack the building block of this step only are prevented by this step. In addition, this step makes it easy to purify the synthesized compound after cleavage from the bead.


  • Solid-phase synthesis of peptides 1
  • Solid-phase synthesis of DNA and RNA 2
  • Applications 3
  • References 4
  • Further reading 5

Solid-phase synthesis of peptides

Solid-phase synthesis is the most common technique for peptide synthesis. Usually, peptides are synthesized from the carbonyl group side (C-terminus) to amino group side (N-terminus) of the amino acid chain in this method, although peptides are synthesised in the opposite direction in cells. In peptide synthesis, an amino-protected amino acid is bound to a solid phase material (most commonly, low cross-linked polystyrene beads), forming a covalent bond between the carbonyl group and the resin, most often an amido or an ester bond. Then the amino group is deprotected and reacted with the carbonyl group of the next amino-protected amino acid. The solid phase now bears a dipeptide. This cycle is repeated to form the desired peptide chain. After all reactions are complete, the synthesized peptide is cleaved from the bead.

The protecting groups for the amino groups mostly used in the peptide synthesis are 9-fluorenylmethyloxycarbonyl group (Fmoc) and t-butyloxycarbonyl (Boc). The Fmoc group is removed from the amino terminus with base while the Boc group is removed with acid.

Many amino acids bear functional groups in the side chain. In order to prevent these functional groups from reacting with the incoming N-protected amino acids, a number of other protecting groups specific for the amino acid to be protected is used. In contrast to BOC and Fmoc groups, these have to be stable over the course of peptide synthesis although they are also removed during the final deprotection of peptides.

Solid-phase synthesis of DNA and RNA

Relatively short fragments of DNA, RNA, and modified oligonucleotides are also synthesized by the solid-phase method. Although oligonucleotides can be synthesized in a flask, they are almost always synthesized on solid phase using a DNA/RNA synthesizer. For a more comprehensive review, see oligonucleotide synthesis.



Further reading

  • Solid-Phase Combinatorial Chemistry, see [1]
  • Noncovalent solid-phase organic synthesis
  • N-(pyrimidin-2-yl)amino acid amides in drug research, see Full article
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